Matthias Pöge, Marcel Dickmanns, Peng Xu, Meijing Li, Oda H. Schiøtz, Christoph O. J. Kaiser, Jianfei Ma, Anna Bieber, Cristina Capitanio, Johann Brenner, Margot Riggi, Sven Klumpe, Manuel Miras, Neda S. Kazemein Jasemi, Waltraud X. Schulze (2025) Making plant tissue accessible for cryo-electron tomography. bioRxiv DOI: 10.1101/2025.02.14.638237.
WX Schulze, ED Schulze, S. Reiße, R. Rischke, O. Bouriaud, B. Büdel, T. Straub, E. Pillai, B. Tanunchai, W. Purahong, S. Simm, M. Noll (2025). Diversity of stomatal and cuticular structures affect microbial colonization in temperate forest tree species. bioRxiv DOI: 10.64898/2025.12.01.691630.
Natalia Betancourt Rosas, Lin Xi, Waltraud Schulze.(2025) Al-assisted nonlinear growth modelling of Arabidopsis rosette area across wild type and mutants : Projekt-Nr. 608.
Pholo-Tait M. Schulze WX, Alseekh S, Valentine AJ, Le Maitre NC, Lloyd JR, Kossmann J, Hills PN (2024) Proteome profiling of lumichrome-treated Arabidopsis thaliana suggests that various regulatory mechanisms mediate enhanced photosynthesis and plant growth. South African Journal of Botany, 172:515-528. doi.org/10.1016/j.sajb.2024.07.036
Ahmed B, Lema-Reyes R, Mukherjee T, Nguyen HV, Wber AL, Schulze WX, Comer JR, Schrick K (2024) Nuclear localization of Arabidopsis HD-Zip IV transcription factor GLABRA is driven by Importin α. Journal of Experimental Botany, erae326. doi.org/10.1093/jxb/erae326
Zhu Z, Krall L, Li Z, Xi L, Luo Hongxiu, Li S, He MJ, Yang X, Zan H, Gilbert M, Gombos S, Wang T, Neuhäuser B, Jacquot A, Lejay L, Zhang J, Liu J, Schulze WX, Wu XN (2024) Transceptor NRT1.1 and receptor kinase QSK1 complex controls PM H+-ATPase activity under low nitrate. Current Biology, 34: 1-13. doi.org/10.1016/j.cub.2024.02.066
Olt P, Ding, Schulze WX, Ludewig U (2024) The LaCLE35 peptide modifies rootlet density and length in cluster roots of white lupin. Plant, Cell and Environment, 47 (4): 1416-1431. doi.org/10.1111/pce.14799
Li Z, Wu XN, Jaquot A, Chaput V, Adamo M, Neuhäuser B, Straub T, Lejay L, Schulze WX (2024) Phosphoregulation in the N-terminus of NRT2.1 affects nitrate uptake by controlling the interaction of NRT2.1 with NAR2.1 and kinase HPCAL1. Journal of Experimental Botany, 75 (7): 2127-2142. doi.org/10.1093/jxb/erad490
Liese A, Eichstädt B, Lederer S, Schulz P, Oehlschläger J, Matschi S, Feijo JA, Schulze WX, Konrad KR, Romeis T (2023) Imaging of plant calcium-sensor kinase conformation monitors real time calcium-dependent decoding in planta. Plant Cell, 36(2): 276-297, doi.org/10.1093/plcell/koad196
Kränzlein M, Schmöckel SM, Geilfus CM, Schulze WX, Altenbuchinger M, Hrenn H, Roessner U, Zörb C (2023) Lipidomic remodeling of contrasting maize (Zea mays L.) hybrids under repeated drought. Frontiers in Plant Sciences, 14: 1050079, doi.org/10.3389/fpls.2023.1050079
Gombos S*, Miras M*, Howe V*, Xi L, Pottier, M, Jasemi N, Schladt M, Ejike O, Neumann U, Hänsch S, Kuttig F, Zhang Z, Dickmanns M, Xu P, Stefan T, Baumeister W, Frommer W, Simon R, Schulze WX (2023) A high confidence Physcomitrium patens plasmodesmata proteome by iterative scoring and validation reveals diversification of cell wall proteins during evolution. New Phytologist, 238(2): 537-543, doi.org/10.1111/nph.18730
Wang J, Xi L, Wu XN, König S, Rohr L, Neumann T, Weber J, Harter K, Schulze WX (2022) PEP7 acts as a peptide ligand for the receptor kinase SIRK1 to regulate aquaporin-mediated water influx and lateral root growth. Molecular Plant, doi.org/10.1016/j.molp.2022.09.016
Hui J, An X, Li Z, Neuhäuser B, Ludewig U, Wu XN, Schulze WX, Chen F, Feng G, Lambers H, Zhang F, Yuan L (2022) The Mycorrhiza-Specific Ammonium Transporter ZmAMT3;1 mediates mycorrhiza-dependent nitrogen uptake in maize roots. Plant Cell, doi.org/10.1093/plcell/koac225
Tan YZ, Keon KA, Abdelaziz R, Imming P, Schulze WX, Schumacher K, Rubinstein JL (2022) Structure of V-ATPase from citrus fruit. Structure, doi.org/10.1016/j.str.2022.07.006
Stefan T, Wu XN, Zhang Y, Fernie A, Schulze WX (2022)Regulatory modules of metabolites and protein phosphorylation in Arabidopsis genotypes with altered sucrose allocation. Frontiers in Plant Sciences,, doi.org/10.3389/fpls.2022.891405
He MJ, Wang J, Herold S, Xi L, Schulze WX (2022) A rapid and universal workflow for label-free quantitation based proteomic and phosphoproteomic studies in cereals. Current Protocols,e325 Volume 2:1-31, doi.org/10.1002/cpz1.425
Han Y, Hong W, Xiong C, Lambers H, Sun Y, Xu Z, Schulze WX, Cheng L (2022) Combining analyses of metabolite profiles and phosphorus fractions to explore high phosphorus-utilization efficiency in maize. Journal of Experimental Botany, PMID: 35303743, dx.doi.org/10.1111/tpj.15630
He MJ, Li X, Mang M, Li Z, Ludewig U, Schulze WX (2022) A systems-biology approach identifies co-expression modules in response to low phosphate supply in maize lines of different breeding history. The Plant Journal, 109(5):1249-1270,, doi.org/10.1111/tpj.15630
Pertl-Obermeyer H, Gimeno A, Kuchler V, Servili E, Huang S, Fang H, Lang V, Sydow K, Poeckl M, Schulze WX, Obermeyer G (2021) pH modulates interaction of 14-3-3s with pollen PM H+ ATPases independently from phosphorylation. Journal of Experimental Botany, 73: 168-181, doi.org/10.1093/jxb/erab387
Xi L, Schulze WX, Wu XN (2021) Phosphoproteomic Analysis of Plant Membranes. Methods in Molecular Biology 2200: 441-451,PMID:33175392, doi.org/10.1007/978-1-0716-0880-7_22
Gilbert M, Li Z, Wu XN, Rohr L, Gombos S, Harter K, Schulze WX (2021) Comparison of path-based centrality measures in protein-protein interaction networks revealed proteins with phenotypic relevance during adaptation to changing nitrogen environments. Journal of Proteomics, 235: 104-114, doi.org/10.1016/j.jprot.2021.104114
Schulze WX, Altenbuchinger M, He Mingjie, Kränzlein M, Zörb C (2021) Proteome profiling of repeated drought stress reveals genotype-specific responses and memory effects in maize. Plant Physiology and Biochemistry, 159: 67-79, PMID:33341081, doi.org/10.1016/j.plaphy.2020.12.009
Chu L, Offenborn JN, Steinhorst L, Wu XN, Xi L, Li Z, Jacquot A, Lejay L, Kudla J, Schulze WX (2021) Plasma membrane CBL Ca2+ sensor proteins function in regulating primary root growth and nitrate uptake by affecting global phosphorylation patterns and microdomain protein distribution. New Phytologist, 229: 2223-2237, doi.org/10.1111/nph.17017
Long L, Pdedas PR, Kristensen RK, Schulze WX, Husted S, Zhang G, Schjoerring JK, Yuan LX (2020) Latent Mn deficiency in maize is aggravated by high light intensity as revealed by physiological, transcriptomic and proteomic analyses. Journal of Experimental Botany, 71 (19): 6116-6127. doi.org/10.1093/jxb/eraa366
Jacquot A, Chaput V, Maries A, Li Z, Tillard P, Fizames C, Bonillo P, Lagier E, Santoni V, Hem S, Martin A, Gojon A, Schulze WX, Lejay L (2020) NRT2.1 phosphorylation prevents root high affinity nitrate uptake activity in Arabidopsis thaliana. New Phytologist, doi.org/10.1111/nph.16710
Li X, Sanagi M, Yu L, Nomura Y, Stolze SC, Yasuda S, Saijo Y, Schulze WX, Feil R, Stitt M, Lunn JE, Nakagami H, Sato T, Yamaguchi J (2020) Protein Phosphorylation Dynamics Under Carbon/Nitrogen-Nutrient Stress and Identification of a Cell Death-Related Receptor-Like Kinase in Arabidopsis. Frontiers in Plant Sciences, 11: 377. doi.org/10.3389/fpls.2020.00377
Jacquot A, Chaput V, Maries A, Li Z, Tillard P, Fizames C, Bonillo P, Lagier E, Santoni V, Hem S, Martin A, Gojon A, Schulze WX, Lejay L (2020) NRT2.1 phosphorylation prevents root high affinity nitrate uptake activity in Arabidopsis thaliana. New Phytologist, accepted. doi: 10.1111/nph.16710. doi.org/10.1111/nph.16710
Durian G, Sedaghatmehr M, Matallana-Ramirez LP, Schilling S, Schaepe S, Guerra T, Herde M, Witte CP, Müller-Röber B, Schulze WX, Balazadeh S, Romeis T (2020) Calcium-dependent protein kinase CPK1 controls cell death by in vivo phosphorylation of senescence master regulator ORE1. The Plant Cell, 32 (5): 1610-1625. doi.org/10.1105/tpc.19.00810
Dier M, Hüther L, Schulze WX, Erbs M, Koehler P, Weigel HJ, Manderscheid R, Zörb C (2020) Elevated atmospheric CO2 concentration has limited effect on wheat grain quality regardless of nitrogen supply. Journal of Agricultural and Food Chemistry, 68 (12): 3711–3721. doi.org/10.1021/acs.jafc.9b07817
Grison MS, Brault M, Kirk P, Wu XN, Schulze WX, Benitez-Alfonso Y, Immel F, Bayer EM (2019) Membrane associated Receptor Like Kinases relocalise to plasmodesmata in response to osmotic stress. Plant Physiology, 181 (1): 142-160. doi.org/10.1104/pp.19.00473
Wu XN, Chu LC, Xi L, Pertl-Obermeyer H, Li Z, Sklodowski K, Sanchez-Rodriguez C, Obermeyer G, Schulze WX (2019) Sucrose-Induced Receptor Kinase 1 is modulated by an interacting kinase with short extracellular domain. Molecular and Cellular Proteomics, 18 (8): 1556-1571. doi.org/10.1074/mcp.RA119.001336
Haj Ahmad F, Wu XN, Stintzi A, Schaller A, Schulze WX (2019) The systemin signaling cascade as derived from phosphorylation time courses under stimulation by systemin and its inactive Thr17Ala (A17) analog. Molecular and Cellular Proteomics, 18 (8): 1526-1542. doi.org/10.1074/mcp.RA119.001367
Wu X, Liu T, Zhang Y, Duan F, Neuhäuser B, Ludewig U, Schulze WX, Yuan L (2019) Ammonium and nitrate regulate NH4+ uptake activity of Arabidopsis ammonium transporter AtAMT1;3 via phosphorylation at multiple C-terminal sites. Journal of Experimental Botany, 70 (18): 4919-4930. doi.org/10.1093/jxb/erz230
Xi L, Wu XN, Gilbert M, Schulze WX (2019) Classification and Interactions of LRR Receptors and Co-receptors Within the Arabidopsis Plasma Membrane - An Overview. Frontiers in Plant Sciences 10: 472. doi.org/10.3389/fpls.2019.00472
Gilbert M, Schulze WX (2019) Global Identification of Protein Complexes within the Membrane Proteome of Arabidopsis Roots Using a SEC-MS Approach. Journal of Proteome Research, 18: 107-119. doi.org/10.1021/acs.jproteome.8b00382
Millar AH, Heazlewood JL, Giglione C, Holdsworth MJ, Bachmair A, Schulze WX (2019) The scope, functions, and dynamics of posttranslational protein modifications. Annual Review of Plant Biology. 70: 119-151. doi.org/10.1146/annurev-arplant-050718-100211
Zhang X, Högy P, Wu XN, Schmid I, Wang X, Schulze WX, Jiang D, Fangmeier A (2018) Physiological and proteomic evidence for the interactive effects of post-anthesis heat stress and elevated CO2 on wheat. Proteomics, 18 (23): e1800262. doi.org/10.1002/pmic.201800262
Pertl-Obermeyer H, Lackner P, Schulze WX, Höpflinger MC, Höftberger M, Foissner I, Obermeyer G (2018) Dissecting the subcellular membrane proteome reveals enrichment of H+ (co-)transporters and vesicle trafficking proteins in acidic zones of Chara internodal cells. PLoS ONE, 13 (8): e0201480. doi.org/10.1371/journal.pone.0201480
Marhava P, Bassukas AEL, Zourelidou M, Kolb M, Moret B, Fastner A, Schulze WX, Cattaneo P, Hammes UZ, Schwechheimer C, Hardtke CS (2018) A molecular rheostat adjusts auxin flux to promote root protophloem differentiation. Nature, 555 (709): 297-300. doi.org/10.1038/s41586-018-0186-z
Wu XN, Xi L, Pertl-Obermeyer H, Li Z, Chu LC, Schulze WX (2017) Highly Efficient Single-Step Enrichment of Low Abundance Phosphopeptides from Plant Membrane Preparations. Frontiers in Plant Science, 8, 1673. DOI: 10.3389/fpls.2017.01673
Safronov O, Kreuzwieser J, Haberer G, Alyousif MS, Schulze W, Al-Harbi N, Arab L, Ache P, Stempfl T, Kruse J, Mayer KX, Hedrich R, Rennenberg H, Salojärvi J, Kangasjärvi J (2017) Detecting early signs of heat and drought stress in Phoenix dactylifera (date palm). PLoS ONE, 12 (6): e0177883. DOI: 10.1371/journal.pone.0177883
Ishihara H, Mroraes T, Pyl ET, Schulze W, Obata T, Schefffel A, Fernie A, Sulpice R, Stitt M (2017) Growth rate correlates negatively with protein turnover in Arabidopsis accessions. The Plant Journal, 91 (3):416-429. DOI: 10.1111/tpj.13576
Sklodowski K, Riedelsberger J, RAddatz N, Riadi G, Caballero J, Cherel I, Schulze W, Graf A, Dreyer I (2017) The receptor-like pseudokinase MRH1 interacts with the voltage-gated potassium channel AKT2. Scientific Reports, 7: 44611. DOI: 10.1038/srep44611
Kruse J, Adams MA, Kadinov G, Arab L, Kreuzwieser J, Alfarraj S, Schulze W, Rennenberg H (2017) Characterization of photosynthetic acclimation in Phoenix dactylifera by a modified Arrhenius equation originally developed for leaf respiration. Trees, DOI:10.1007/s00468-016-1496-0
Fasbender L, Maurer D, Kreuzwieser J, Kreuzer I, Schulze W, Kruse J, Becker D, Alfarraj Saleh, Hedrich R, Werner C, Rennenberg H (2017) The carnivorous Venus flytrap uses prey derived amino acid carbon to fuel respiration. New Phytologist, 214 (2): 597-606. DOI: 10.1111/nph.14404
Schardon K, Hohl M, Graff L, Pfannstiel J, Schulze W, Stintzi A, Schaller A (2016) Plant peptide hormone maturation by subtilisin-like serine proteinases. Science, 354 (6319): 1594-1597. DOI: 10.1126/science.aai8550
Zakhartsev M, Medvedeva I, Orlov Y, Akberdin I, Krebs O, Schulze WX (2016) Metabolic model of central carbon and energy metabolisms of growing Arabidopsis thaliana in relation to sucrose translocation. BMC Plant Biology, 16 (1): 262. DOI: 10.1186/s12870-016-0868-3
Menz J, Li Z, Schulze W, Ludewig U (2016) Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant Journal, 88 (5): 717-734. DOI: 10.1111/tpj.13272
Pertl-Obermeyer H, Wu XN, Schrodt J, Müdsam C, Obermeyer G, Schulze WX (2016) Identification of cargo for adaptor protein complexes AP-3 and AP-4 by sucrose gradient profiling. Molecular and Cellular Proteomics, 15 (9): 2877-2889. DOI: 10.1074/mcp.M116.060129
Bemm F, Becker D, Larisch C, Kreuzer I, Escalante-Perez M, Schulze WX, Ankebrand M, Keller AL, Krol E, Al-Rasheid KA, Mithöfer A, Weber AP, Schultz J, Hedrich R (2016) Endocrine gene networks of the Venus flytrap allow the Darwin plant to live on an animal diet. Genome Research, 26: 1-14. DOI: 10.1101/gr.202200.115
Pertl-Obermeyer H, Trentmann O, Duscha K, Neuhaus HE, Schulze WX (2016) Quantitation of vacuolar sugar transporter abundance changes using QconCAT synthtetic peptides. Frontiers in Plant Science, 7: 411. DOI: 10.3389/fpls.2016.00411
Figueroa CM, Feil R, Ishihara H, Watanabe M, Kölling K, Krause U, Höhne M, Encke B, Plaxton WC, Zeeman SC, Li Z, Schulze WX, Hoefgen R, Stitt M, Lunn JE (2016) Trehalose 6-phosphate coordinates organic and amino acid metabolism with carbon availability. Plant Journal, 85 (3): 410-423. DOI: 10.1111/tpj.13114
Zakhartsev M, Pertl-Obermeyer H, Schulze WX (2016) From Phosphoproteome to Modeling of Plant Signaling Pathways. Methods in Molecular Biology, 1394: 245-259. DOI: 10.1007/978-1-4939-3341-9_18
Eggert E, Gerstenberger A, Gier K, Obata, T, Fernie AR, Grimm B, Schulze W, Kühn C (2016) A protein disulfide isomerase interacting with plant sucrose transporters is important for redox homeostasis, and confers salt and drought tolerance. Plant, Cell and Environment, 39 (6):1366-1380. DOI: 10.1111/pce.12694
Dautel R, Wu XN, Heunemann M, Schulze WX, Harter K (2016) Cytokinin-activation of the sensor histidine kinases AHK2 and AHK3 proceeds into multiple serine/threonine/tyrosine phosphorylation pathways. Molecular Plant, 9 (1):182-186. DOI: 10.1016/j.molp.2015.10.002
Rettenberger AT, Schulze W, Breer H, Haid D (2015) Analysis of the protein related receptor GPR92 in G-cells. Frontiers in Physiology 6:261. DOI: 10.3389/fphys.2015.00261
Li Z, Phillip D, Neuhäuser B, Schulze WX, Ludewig U (2015) Protein dynamics in young maize root hairs in response to macro- and micronutrient deprivation. Journal of Proteome Research, 4 (8): 3362-3371. DOI: 10.1021/acs.jproteome.5b00399
Szymanski WG, Zauber H, Erban A, Wu XN, Schulze WX (2015) Cytoskeletal components define protein location to membrane microdomains. Molecular and Cellular Proteomics, 14 (9): 2493-2509. DOI: 10.1074/mcp.M114.046904
Yao Q, Schulze WX, Xu D (2015) Phosphorylation site prediction in plants. Methods in Molecular Biology 1306: 217-228. DOI: 10.1007/978-1-4939-2648-0_17
Schulze WX, Yao Q, Xu D (2015) Databases for plant phosphoproteomics. Methods in Molecular Biology 1306: 207-216. DOI: 10.1007/978-1-4939-2648-0_16
Wu XN, Schulze WX (2015) Kinase activity and specificity assay using synthetic peptides. Methods in Molecular Biology 1306: 97-104. DOI: 10.1007/978-1-4939-2648-0_7
Wu XN, Schulze WX (2015) Phosphopeptide profiling of receptor kinase mutants. Methods in Molecular Biology 1306: 71-79. DOI: 10.1007/978-1-4939-2648-0_5
Zulawski M, Schulze WX (2015) The plant kinome. Methods in Molecular Biology 1306: 1-23. DOI: 10.1007/978-1-4939-2648-0_1
Thieme CJ, Rojas-Triana M, Stecyk E, Schudoma C, Zhang W, Yang L, Minambres M, Walther D, Schulze WX, Paz-Ares J, Scheible WR, Kragler F (2015) Endogenous Arabidopsis messenger RNAs transported to distant tissues. Nature Plants, 1; 15025. DOI: 10.1038/nplants.2015.25
Fuglsang A, Kristensen A, Cuin T, Schulze W, Persson J, Thuesen, KH, Ytting CK, Oehlschlaeger C, Mahmood K, Sondergaard TE, Shabala S, Palmgren MG (2014) Receptor mediated control of primary active proton pumping at the plasma membrane. The Plant Journal, 8 (6): 951-964. DOI: 10.1111/tpj.12680
Matthes A, Köhl K, Schulze WX (2014) SILAC and alternatives in studying cellular proteomes of plants. Methods in Molecular Biology 1188: 65-83. DOI: 10.1007/978-1-4939-1142-4_6
Zulawski M, Schulze G, Braginets R, Hartmann S, Schulze WX (2014)The Arabidopsis Kinome: phylogeny and evolutionary insights into functional diversification. BMC Genomics, 15 (1): 548. DOI: 10.1186/1471-2164-15-548
Zourelidou M, Absmanner B, Weller B, Barbosa I, Willige B, Fastner A, Streit V, Port S, Colcombet J, de la Fuente vaon Bentem S, Hirt H, Kuster B, Schulze WX, Hammes U, Schwechheimer C (2014) Auxin efflux by PIN-FORMED proteins is activated by two different protein kinases, D6 PROTEIN KINASE and PINOID. eLife, e02860. DOI: 10.7554/eLife.02860
Wu X, Sklodowski K, Encke B, Schulze WX (2014) A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase. Journal of Proteome Research, 13 (7): 3397-3409. DOI: 10.1021/pr5003164
Arrivault S, Günther M, Florian A, Encke B, Feil R, Vosloh D, Lunn JE, Sulpice R, Fernie AR, Stitt M, Schulze WX (2014) Dissecting the subcellular compartmentation of proteins and metabolites in Arabidopsis leaves using non-aqueous fractionation. Molecular and Cellular Proteomics, 13: 2246-2259. DOI: 10.1074/mcp.M114.038190
Pertl-Obermeyer H, Schulze WX, Obermeyer G (2014) In-vivo crosslinking combined with mass spectrometry analysis reveals receptor-like kinases and Ca2+-signaling proteins as putative interaction partners of pollen plasma memberane H+-ATPases. Journal of Proteomics, 108C: 17-29. DOI: 10.1016/j.jprot.2014.05.001
van Wijk K, Friso G, Walther D, Schulze WX (2014) Meta-analysis Arabidopsis thaliana phospho-proteomics data reveals and compartmentalization of phosphorylation motifs. Plant Cell, 26 (6): 2367-2389. DOI: 10.1105/tpc.114.125815
Zauber H, Burgos A, Garapati P, Schulze WX (2014) Plasma membrane lipid–protein interactions affect signaling processes in sterol-biosynthesis mutants in Arabidopsis thaliana. Frontiers in Plant Science, 5: 78. Article-of-the-month in March 2014. DOI: 10.3389/fpls.2014.00078
Nawrot R, Zauber H, Schulze WX (2014) Global proteomic analysis of Chelidonium majus and Corydalis cava (Papaveraceae) extracts revealed similar defense-related protein compositions. Fitoterapia, 94C: 77-87. DOI: 10.1016/j.fitote.2014.01.015
Allan E, Bossdorf O, Dormann CF, Prati D, Gossner MM, Tscharntke T, Blüthgen N, Bellach M, Birkhofer K, Boch S, Böhm S, Börsching C, Chatzinotas A, Christ S, Daniel R, Dietkötter T, Fischer C, Friedl T, Glaser K, Hallmann C, Hodac L, Hölzel N, Jung K, Klein AM, Klaus VH, Kleinbecker T, Krauss J, Lange M, Morris EK, Müller J, Nacke H, Pasalic E, Rillig MC, Rothenwöhrer C, Schall P, Scherber C, Schulze WX, Socher SA, Steckel J, Steffan-Dewenter I, Türke M, Weiner CN, Werner M, Westphal C, Wolters V, Wubet T, Gockel S, Gorke M, Hemp A, Renner SC, Schöning I, Pfeiffer S, König-Ries B, Buscot F, Linsenmair KE, Schulze ED, Weisser W, Fischer M (2014) Interannual variation in land-use intensity enhances grassland multidiversity. PNAS, 111 (1): 308-313. DOI: 10.1073/pnas.1312213111
Duan G, Walther D, Schulze WX (2013) Reconstruction and analysis of nutrient-induced phosphorylation networks in Arabidopsis thaliana. Frontiers in Plant Science 4: 540. DOI: 10.3389/fpls.2013.00540
Zauber H, Szymanski WG, Schulze WX (2013) Unraveling sterol-dependent membrane phenotypes by analysis of protein abundance-ratio distributions in different membrane fractions under biochemical and endogenous sterol-depletion. Molecular and Cellular Proteomics, 12 (12): 3732-3743. DOI: 10.1074/mcp.M113.029447
Nawrot R, Barylski J, Schulze WX (2013) Incorrectly annotated keratin derived peptide sequences lead to misleading MS/MS interpretation. Journal of Poteomics, 91C: 270-273. DOI: 10.1016/j.jprot.2013.07.009
Wu X, Sanchez-Rodrigues C, Pertl-Obermeyer H, Obermeyer G, Schulze WX (2013) Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis. Molecular and Cellular Proteomics, 12 (10): 2856-2873. DOI: 10.1074/mcp.M113.029579
Dubiella U, Seybold H, Durian G, Komander E, Lassig R, Witte CP, Schulze WX, Romeis T (2013) A CDPK/NADPH-oxidase activation cricuit is required for rapid defense signaling propagation. PNAS, 110 (21): 8744-8749. DOI: 10.1073/pnas.1221294110
Walentowski H, Schulze ED, Teodosiu M, Bouriaud O, von Heßberg A, Bußler H, Baldauf L, Schulze I, Wäldchen J, Böcker R, Herzog S, Schulze W (2013) Sustainable forest management of Natura 2000 sites: a case study from a private forest in the Romanian Southern Carpathians. Annals of Forest Research, 56 (1): 217-224. DOI: 10.15287/afr.2013.57
Szymanski W, Kierszniowska S, Schulze WX (2013) Metabolic labeling and membrane fractionation for comparative analysis of Arabidopsis thaliana suspension cell cultures. Journal of Visualized Experiments, 79: e50535. DOI: 10.3791/50535. DOI: 10.3791/50535
Demir F, Hontrich C, Blachutzik JO, Scherzer S, Reinders Y, Kierszniowska S, Schulze WX, Harms GS, Hedrich R, Geiger D , Kreuzer I (2013) Arabidopsis naondomain-delimited ABA signaling pathway regulated the anion channel SLAH3. PNAS, 110 (20): 8296-8301. DOI: 10.3791/50535. DOI: 10.1073/pnas.1211667110
Zauber H, Schüler V, Schulze W (2013) Systematic evaluation of reference protein normalization (RPN) in proteomic experiments. Frontiers in Plant Science, 4: 25. DOI: 10.3389/fpls.2013.00025
Matschi S, Werner S, Schulze WX, Legen J, Hilger HH, Romeis T (2013) Function of calcium-dependent protein kinase CPK28 of Arabidopsis thaliana in plant stem elongation and vascular development. The Plant Journal, 73 (6): 883-896. DOI: 10.1111/tpj.12090
Zulawski M, Braginets R, Schulze WX (2013) PhosPhAt goes kinases – Searchable protein kinase target information in the plant phosphorylation site database PhosPhAt. Nucleic Acids Research, 41: D1176-1184. DOI: 10.1093/nar/gks1081
Zauber H, Schulze WX (2012) Proteomics wants cRacker: Automated standardized data analysis of LC/MS derived proteomic data. Journal of Proteome Research, 11 (11): 5548-5555. DOI: 10.1021/pr300413v
Christian JO, Braginets R, Schulze WX, Walther D (2012) Characterization and prediction of protein phosphorylation hotspots in Arabidopsis thaliana. Frontiers in Plant Science, 3: 207. DOI: 10.3389/fpls.2012.00207
Schulze WX*, Sanggaard KW*, Kreuzer I, Knudsen AD, Bemm F, Thogersen IB, Bräutigam A, Thomsen LR, Schliesky S, Dyrlund TF, Escalante-Pérez M, Becker D, Schulz J, Karring H, Weber A, Hojrup P, Hedrich R, Enghild JJ (2012) The protein composition of the digestive fluid from the Venus flytrap sheds light on prey digestion mechanisms. Molecular and Cellular Proteomics, 11 (11): 1306-1319. * equal contribution. DOI: 10.1074/mcp.M112.021006
Birkhofer K, Schöning I, Alt F, Herold N, Klamer B, Maraun M, Marhan S, Oelman Y, Wubet T, Yukorn A, Begerow D, Berner D, Buscot F, Daniel R, Diekötter T, Ehnes RB, Erdmann G, Fischer C, Foesel B, Groh J, Gutknecht J, Kandeler E, Lang C, Lohaus G, Meyer A, Nack H, Näther A, Overmann J, Polle A, Pollierer MM, Scheu S, Schloter M, Schulze ED, Schulze W, Weinert J, Weisser W, Wolters V, Schrumpf M (2012) General relationships between abiotic soil properties and soil biota across spatial scales and different land-use types. PLoS ONE, 7 (8): e43292. DOI: 10.1371/journal.pone.0043292
Pyl ET, Piques M, Ivakov A, Schulze W, Ishihara H, Stitt M, Sulpice R. (2012) Metabolism and growth in Arabidopsis depend on the daytime temperature but are temperature-compensated against cool nights. The Plant Cell, 24 (6): 2443-2469. DOI: 10.1105/tpc.112.097188
Mastrobuoni G, Irgang S, Pietzke M, Wenzel M, Assmus HE, Schulze WX, Kempa S (2012) Proteome dynamics and early salt stress response of the photosynthetic organism Chlamydomonas reinhardtii. BMC Genomics, 13 (1): 215. DOI: 10.1186/1471-2164-13-215
Zauber H, Mosler S, von Heßberg A, Schulze WX (2012) Dynamics of salivary proteins and metabolites during extreme endurance sports – A case study. Proteomics, 12 (13): 2221-2235. DOI: 10.1002/pmic.201100228
Arsova B, Zauber H, Schulze WX (2012) Precision, proteome coverage and dynamic range of Arabidopsis proteome profiling using 15N metabolic labelling and label-free approaches. Molecular and Cellular Proteomics, 11 (9): 619-628. DOI: 10.1074/mcp.M112.017178
Arsova B, Schulze WX (2012) Current status of the plant phosphorylation site database PhosPhAt and its use as a resource for molecular plant physiology. Frontiers in Plant Science, 3: 132. DOI: 10.3389/fpls.2012.00132
Arsova B, Kierszniowska S, Schulze WX (2012) The use of heavy nitrogen in quantitative proteomics-experiments in plants. Trends in Plant Science, 17 (2): 102-112. DOI: 10.1016/j.tplants.2011.11.001
Gaude N, Schulze WX, Franken P, Krajinski F (2012) Cell type-specific protein and transcription profiles implicate periarbuscular membrane synthesis as an important carbon sink in the mycorrhizal symbiosis. Plant Signaling and Behavior, 7 (4): 461-464. DOI: 10.4161/psb.19650
Hädrich N, Hendriks JHM, Kötting O, Arrivault S, Feil R, Zeeman, SC, Gibon Y, Schulze WX, Stitt M, Lunn JE (2012) Mutagenesis of the regulatory cysteine-81 in the APS1 subunit of ADP-glucose pyrophosphorylase alters diurnal starch turnover in Arabidopsis thaliana leaves. The Plant Journal, 70 (2): 231-224. DOI: 10.1111/j.1365-313X.2011.04860.x
Engelsberger WR, Schulze WX (2012) Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen starved Arabidopsis seedlings. The Plant Journal, 69 (6): 978-995. DOI: 10.1111/j.1365-313X.2011.04848.x
Schulze WX, Schneider T, Starck S, Martinoia E, Trentmann O (2012) Cold acclimation induces changes in Arabidopsis tonoplast protein abundance and activity and alters phosphorylation of tonoplast monosaccharide transporters. The Plant Journal, 69 (3): 529-541. DOI: 10.1111/j.1365-313X.2011.04812.x
Krügel U, He HX, Gier K, Reins J, Chincinska I, Grimm B, Schulze WX, Kühn C (2012) The potato sucrose transporter StSUT1 interacts with a DRM-associated protein disulfide isomerase. Molecular Plant, 5 (1): 43-62. DOI: 10.1093/mp/ssr048
Ramirez-Aguilar SJ, Keuthe M, Rocha M, Fedyaev VV, Kramp K, Gupta KJ, Rasmusson AG, Schulze WX, van Dongen JT (2011) The composition of plant mitochondrial supercomplexes changes with the oxygen availability. Journal of Biological Chemistry, 286 (50): 43045-43053. DOI: 10.1074/jbc.M111.252544
Pertl H, Rittmann S, Schulze WX, Obermeyer G (2011) Identification of lily pollen 14-3-3 isoforms and their sub-cellular and time dependent expression profile. Biological Chemistry, 392: 249–262. DOI: 10.1515/BC.2011.026
Joshi HJ, Hirsch-Hoffmann M, Bärenfaller K, Gruissem W, Baginsky S, Schmidt R, Schulze WX, Sun Q, van Wijk KJ, Egelhofer V, Wienkoop S, Weckwerth W, Bruley C, Rolland N, Toyoda T, Nakagami H, Jones AME, Briggs SP, Castleden I, Tanz SK, Millar H, Heazlewood JL (2011) MASCP Gator: An aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiology, 155 (1): 259-270. DOI: 10.1104/pp.110.168195
Keinath NF, Kierszniowska S, Lorek J, Bourdais G, Kessler SA, Asano H, Grossniklaus U, Schulze WX, Robatzek S, Panstruga R (2010) PAMP-induced changes in plasma membrane compartmentalization reveal novel components of plant immunity. Journal of Biological Chemistry, 285 (50): 39140-39149. DOI: 10.1074/jbc.M110.160531
Riano-Pachon DM, Kleesen S, Neigenfind J, Durek P, Weber E, Engelsberger WR, Walther D, Selbig J, Schulze WX, Kersten B (2010) Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana. BMC Genomics 11: 411. DOI: 10.1186/1471-2164-11-411
Apel W, Schulze WX, Bock R (2010) Identification of protein stability determinants in chloroplasts. The Plant Journal 63: 636-650. DOI: 10.1111/j.1365-313X.2010.04268.x
Schulze WX (2010) Proteomic approaches to understand protein phosphorylation in pathway modulation. Current Opinion in Plant Biology, 13: 1-8. DOI: 10.1016/j.pbi.2009.12.008
Schulze WX, Usadel B (2010) Quantitation in Mass-Spectrometry-Based Proteomics. Annual Review of Plant Biology, 61: 491-516. DOI: 10.1146/annurev-arplant-042809-112132
Durek P, Schmidt R, Heazlewood JL, Jones A, MacLean D, Nagel A, Kersten B, Schulze WX (2010) PhosPhAt: The Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Research 38: D828-834. DOI: 10.1093/nar/gkp810
Lanquar V, Loque D, Hörmann F, Yuan L, Bohner A, Engelsberger WR, Lalonde S, Schulze WX, von Wiren N, Frommer WB (2009) Feedback inhibition of ammonium uptake by a phospho-dependent allosteric mechanism. The Plant Cell 21 (11): 3610-3622. DOI: 10.1105/tpc.109.068593
Piques MC, Schulze WX, Höhne M, Usadel B, Gibon Y, Rohwer J, Stitt M (2009) Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis. Molecular Systems Biology 5 (314): E1-E17. DOI: 10.1038/msb.2009.68
Pertl H, Schulze WX, Obermeyer G (2009) The pollen organelle membrane proteome reveals highly spatial-temporal dynamics during germination and tube growth. Journal of Proteome Research 8 (11): 5142-5152. DOI: 10.1021/pr900503f
Kierszniowska S, Walther D, Schulze WX (2009) Ratio-dependent significance thresholds in reciprocal 15N-labeling experiments as a robust tool in detection candidate proteins responding to biological treatment. Proteomics 9 (7): 1916-1924. DOI: 10.1002/pmic.200800443
Kierszniowska S, Seiwert B, Schulze WX (2009) Definition of Arabidopsis sterol-rich membrane microdomains by differential treatment with methyl-ß-cyclodextrin and quantitative proteomics. Molecular and Cellular Proteomics 8 (4): 612-623. DOI: 10.1074/mcp.M800346-MCP200
Kersten B, Agrawal, GK, Durek P, Neigenfind J, Schulze WX, Walther D, Rakwal R (2009) Plant phosphoproteomics: An update. Proteomics, 9: 964-988. DOI: 10.1002/pmic.200800548
Rogalski M, Schöttler MA, Thiele W, Schulze WX, Bock R (2008) Rpl33, a nonessential plastid-encoded ribosomal protein in tobacco, is required under cold stress conditions. The Plant Cell 20 (8): 2221-2237. DOI: 10.1105/tpc.108.060392
Heazlewood JL, Durek P, Hummel J, Selbig J, Weckwerth W, Walther D, Schulze WX (2008) PhosPhAt: A Database of phosphorylation sites in Arabidopsis thaliana and a plant specific phosphorylation site predictor. Nucleic Acids Research 36: D1015-D1021. DOI: 10.1093/nar/gkm812
Niittylä T, Fuglsang AT, Palmgren MG, Frommer WB, Schulze WX (2007) Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis. Molecular and Cellular Proteomics 6 (10): 1711-1726. DOI: 10.1074/mcp.M700164-MCP200
Hummel J, Niemann M, Wienkoop S, Schulze W, Steinhauser D, Selbig J, Walther D, Weckwerth W (2007) ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8: 216-223. DOI: 10.1186/1471-2105-8-216
Boeri Erba E, Matthisen R, Bunkenborg J, Schulze WX, Di Stefano P, Cabodi S, Tarone G, Defilippi P, Jensen ON (2007) Quantitation of multisite EGF receptor phosphorylation using mass spectrometry and a novel normalization approach. Journal of Proteome Research 6 (7): 2768-2785. DOI: 10.1021/pr060675m
Engelsberger WR, Erban A, Kopka J, Schulze WX (2006) Metabolic labeling of plant cell cultures with K15NO3 as a tool for quantitative analysis of proteins and metabolites. Plant Methods 2 (14): 1-11. DOI: 10.1186/1746-4811-2-14
Gruhler A, Schulze WX, Matthisen R, Mann M, Jensen ON (2005) Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry. Molecular and Cellular Proteomics 4 (11): 1697-1709. DOI: 10.1074/mcp.M500190-MCP200
Schulze WX (2005) Protein analysis in dissolved organic matter: What proteins from organic debris, soil leachate and surface water can tell us – A perspective. Biogeosciences 2: 75-86. DOI:10.5194/bg-2-75-2005
Schulze WX, Deng L, Mann M (2005) Phosphotyrosine interactome of the ErbB-receptor kinase family. Molecular Systems Biology 1 (5): E1-E13. DOI: 10.1038/msb4100012
Schulze WX, Gleixner G, Kaiser K, Guggenberger G, Mann M, Schulze ED (2005) A proteomic fingerprint of dissolved organic carbon and soil particles. Oecologia, 142 (3): 335-343. DOI: 10.1007/s00442-004-1698-9
Schulze WX, Mann M (2004) A novel proteomic screen for peptide-protein interactions. Journal of Biological Chemisty 279: 10756-10764. DOI: 10.1074/jbc.M309909200
Frommer WB, Schulze WX, Lalonde S (2003) Hexokinase, Jack-of-all-trades. Science 300: 261-26. DOI: 10.1126/science.1084120
Schulze WX, Reinders A, Ward JM, Lalonde S, Frommer WB (2003) Interactions between co-expressed Arabidopsis sucrose transporters in the split-ubiquitin system. BMC Biochemistry 4: 3. DOI: 10.1186/1471-2091-4-3
Reinders A, Schulze W*, Kühn C*, Barker L, Ward J, Frommer WB (2002) Protein-protein interactions between sucrose transporters of different affinities co-localized in the same enucleate sieve element. The Plant Cell 14 (7): 1567-1577. *equal contribution. DOI: 10.1105/tpc.002428
Schulze W*, Reinders A*, Thaminy S, Stagljar I, Frommer WB, Ward JM (2002) Intra- and intermolecular interactions in sucrose transporters at the plasma membrane detected by the split-ubiquitin system and functional assays. Structure 10 (6): 763-772. *equal contribution. DOI: 10.1016/s0969-2126(02)00773-6
Schulze W, Schulze ED, Schulze I, Oren R (2001) Quantification of insect nitrogen utilization by the venus fly trap Dionaea muscipula catching prey with highly variable isotope signatures. Journal of Experimental Botany 52 (358): 1041-1049. DOI: 10.1093/jexbot/52.358.1041
Schulze W, Weise A, Frommer WB, Ward JM (2000) Function of the cytosolic N-terminus of sucrose transporter AtSUT2 in substrate affinity. FEBS Letters 485: 189-194. DOI: 10.1016/s0014-5793(00)02180-3
Barker L, Kühn C, Weise A, Schulz A, Gebhardt C, Hirner B, Hellmann H, Schulze W, Ward JM, Frommer WB (2000) SUT2, a putative sucrose sensor in sieve elements. The Plant Cell 12 (7): 1153-1164. DOI: 10.1105/tpc.12.7.1153
Schulze ED, Farquhar G, Miller JM, Walker BH, Schulze W (1999) Interpretation of increased foliar d15N in woody species along a rainfall gradient in northern Australia: A response on "Foliar d15N is negatively correlated with rainfall along the IGBP transect in Australia" by AT Austin and OE Sala. Australian Journal of Plant Physiology 26: 296-298. DOI:10.5555/19990608795
Wirth C, Schulze ED, Schulze W, von Stünzner-Karbe D, Ziegler W, Miljukova IM, Sogatchev A, Varlagin AB, Panvyorov M, Grigoriev S, Kusnetzova W, Siry M, Hardes G, Zimmermann R, Vygodskaya NN (1999) Above-ground biomass and structure of pristine Siberian Scots pine forests as controlled by competition and fire. Oecologia 121: 66-80. DOI: 10.1007/s004420050908
Schulze ED, Lloyd J, Kelliher FM, Wirth C, Rebmann C, Lühker B, Mund M, Milykova I, Schulze W, Ziegler, Varlagin A, Valentini R, Dore S, Grigoriev S, Kolle O, Vygodskaya NN (1999) Productivity of forests in the Eurosiberian boreal region and their potential to act as a carbon sink - A synthesis. Global Change Biology 5: 703-722. DOI: 10.1046/j.1365-2486.1999.00266.x
Schulze W, Frommer WB, Ward JM (1999) Transporters for ammonium, amino acids and peptides are expressed in pitchers of the carnivorous plant Nepenthes. The Plant Journal 17(6): 637-646. DOI: 10.1046/j.1365-313x.1999.00414.x
Schulze ED, Williams RJ, Farquhar GD, Schulze W, Langridge J, Miler JM, Walker BH (1998) Carbon and nitrogen isotope discrimination and nitrogen nutrition of trees along a rainfall gradient in northern Australia. Australian Journal of Plant Physiology 25: 413-425. DOI: 10.1071/PP97113
Schulze W, Schulze ED, Pate JS, Gillison AN (1997) The nitrogen supply from soils and insects during growth of the pitcher plants Nepenthes mirabilis, Cephalotus follicularis, and Darlingtonia californica. Oecologia 112: 464-471. DOI: 10.1007/s004420050333
Schulze ED, Ellis R, Schulze W, Trimborn P, Ziegler H (1996) Diversity, metabolic types and d13C carbon isotope ratios in the grass flora of Namibia in relation to growth form, precipitation and habitat conditions. Oecologia 106: 352-369. DOI: 10.1007/BF00334563
Kobak KI, Turchinovich IY, Kondrasheva NY, Schulze ED, Schulze W, Koch H, Vygodskaya NN (1996) Vulnerability and adaptation of the larch forest in Eastern Siberia to climate change. Water, Air, and Soil Pollution 92: 119-127. Springer:10.1007/BF00175558
Schulze ED, Schulze W, Kelliher FM, Vygodskaya NN, Ziegler W, Kobak KI, Koch H, Arneth A, Kusnetsova WA, Sogatchev A, Issajev A, Bauer G, Hollinger DY (1995) Aboveground biomass and nitrogen nutrition in a cronosequence of pristine Darhurian Larix stands in eastern Siberia. Canadian Journal of Forestry 25: 943-960. DOI: 10.1139/x95-103
Schulze W, Schulze ED, Stader J, Heilmeier H, Stitt M, Mooney HA (1994) Growth and reproduction of Arabidopsis thaliana in relation to storage of starch and nitrate in the wild-type and in starch-deficient and nitrate-uptake-deficient mutants. Plant, Cell and Environment 17: 795-809. DOI: 10.1111/j.1365-3040.1994.tb00174.x
Schulze ED, Gebauer G, Schulze W, Pate JS (1991). The utilization of nitrogen from insect capture by different growth forms of Drosera from Southwest Australia. Oecologia 87: 240-246. DOI: 10.1007/BF00325262
Schulze W, Stitt M, Schulze ED, Neuhaus HE, Fichtner K (1991) A Quantification of the Significance of Assimilatory Starch for Growth of Arabidopsis thaliana L. Heynh. Plant Physiology 95 (3): 890-895. DOI: 10.1104/pp.95.3.890.
Schulze W, Schulze ED (1990) Insect capture and growth of the insectivorous Drosera rotundifolia. Oecologia 82: 427-429. DOI: 10.1007/BF00317494